Data science & engineering
Bioimage & Microscopy Image Analysis
We turn microscopy images into reliable measurements: segmenting nuclei, cells and structures, measuring intensity and morphology, and building pipelines that process whole screens reproducibly.
Who it is for
- Cell-biology and microbiology labs with imaging data
- Screening groups running high-content assays
- Imaging facilities that need custom analysis
What you send us
- Images with metadataTIFF, OME-TIFF or vendor formats readable by Bio-Formats.
- Annotation examplesA few manually annotated images, if available, to validate segmentation.
What you receive
- Per-object and per-image measurement tables
- Annotated example images and figures
- Reusable Fiji, CellProfiler or Python pipeline
- Methods section and report
Methodology
How the work runs
Each step is agreed with you and documented. Typical tools: Fiji · CellProfiler · scikit-image · Cellpose · StarDist · napari
- ScopingWhat must be measured, image quality and acquisition settings.
- Pipeline developmentSegmentation (classical or deep-learning) and measurement on a pilot set.
- ValidationAgreement with manual annotation reported before full processing.
- Processing and hand-overFull dataset processed, tidy per-object tables, statistics and a reusable pipeline.
Quality controls
Checks applied to every project
- Segmentation accuracy against manual annotation
- Per-image QC flags for focus and saturation
- Batch and plate-position effects checked
Scope and limits
What the work can and cannot show
- Measurements are only as good as acquisition; saturated or out-of-focus images are flagged, not rescued.
- Research use only: results are not a clinical or diagnostic report.
Free quote
Start a Bioimage project.
Describe your data and questions. We reply with questions or a written quote.
It depends on the data type, the number of samples and the depth of interpretation you need. Every project receives a written quote with scope, deliverables, price and delivery date after a short exchange about your data and questions. The quote is free and carries no obligation.
Data are used only for your project, transferred through a channel you approve and deleted at the end of the engagement on request. We will sign your institution’s confidentiality agreement before any data are shared.
Yes. You receive a methods section with software versions and parameters, and every figure can be regenerated from the delivered code. Authorship or acknowledgement follows your field’s norms and is agreed at the start.
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